Bioinformatics Analyst, Genomic Data

Bioinformatics Support II - Genomic Data & Pipeline Analyst

***** An active NACI clearance or the ability to obtain a NACI clearance is required for consideration. ***

The Bioinformatics Support II role provides advanced scientific and analytical support to CDC genomic surveillance programs. This position serves as a bridge between laboratory science and computational analysis, supporting the execution of genomic surveillance pipelines and analysis of sequencing data to inform public health operations.

Compensation & Benefits:

Pay commensurate with experience.
Full-time benefits include Medical, Dental, Vision, 401K, and other possible benefits as provided. Benefits are subject to change with or without notice.

Bioinformatics Support II - Genomic Data & Pipeline Analyst Responsibilities Include:
* Execute and monitor amplicon and metagenomic sequencing pipelines
* Perform QC checks on sequencing data
* Analyze variant trends and lineage assignments
* Generate reports and visualizations
* Maintain reproducible workflows
* Perform QC on sequencing outputs (coverage, lineage, variants)
* Analyze genomic data using tools such as:
* Nextclade
* Freyja
* Minimap2
* Work in Linux/Unix environments
* Develop scripts in Python, R, or Bash
* Maintain reproducible workflows using Nextflow or Snakemake
* Collaborate with lab and epidemiology teams

Bioinformatics Support II - Genomic Data & Pipeline Analyst Experience, Education, Skills, Abilities requested:
* Master's or PhD in Bioinformatics, Microbiology, or related field
* Experience with tools: Nextclade, Freyja, Minimap2
* Python/R/Bash proficiency
* Linux/Unix experience
* Strong communication and analytical skills
* Ability to work independently and resolve problems without constant supervision
* Excellent written and verbal communication skills
* Advanced proficiency in Microsoft Office (Outlook, Word, Excel, PowerPoint)
* Must pass the pre-employment qualifications of Cherokee Federal

Company Information:
Cherokee Nation Integrated Health (CNIH) is a part of Cherokee Federal - the division of tribally owned federal contracting companies owned by Cherokee Nation Businesses. As a trusted partner for more than 60 federal clients, Cherokee Federal LLCs are focused on building a brighter future, solving complex challenges, and serving the government's mission with compassion and heart. To learn more about CNIH, visit cherokee-federal.com.

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Cherokee Federal is a military-friendly employer. Veterans and active military transitioning to civilian status are encouraged to apply.

Similar Job Titles
* Bioinformatics Analyst
* Genomic Data Analyst
* Computational Biology Analyst

Keywords:

• Bioinformatics Pipelines
• Genomics
• Variant Analysis
• Linux
• Public Health Data

Legal Disclaimer: All qualified applicants will receive consideration for employment without regard to protected veteran status, disability or any other status protected under applicable federal, state or local law.
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